The technical team
behind your research.
You run the experiments and ask the questions. We build the AI models, data pipelines and research IT that turn your biological data into discovery — no computer science background required.
- Plain-language collaboration
- Reproducible, publication-ready results
- Your data stays yours
Bioinformatics & AI
Bioinformatics Pipelines
Genomics, transcriptomics, proteomics and single-cell workflows — automated, documented and reproducible.
Custom AI / ML Models
Predictive models, classification and deep learning tailored to your biological questions and datasets.
Data Analysis & Visualization
Statistical analysis and clear, figure-ready visuals that are ready for your manuscript or grant.
Research IT & Infrastructure
Research IT & Sysadmin
Lab servers, workstations, storage and networks — set up, secured and maintained, so nothing goes down mid-experiment.
Cloud & HPC Setup
We provision and manage the compute — cloud, GPU or on-prem clusters — so heavy jobs and ML training just run.
Security & Compliance
HIPAA / GDPR / 21 CFR Part 11 / IRB-aware data handling, access controls and audit trails — built in, not bolted on.
Backup & Disaster Recovery
Automated, tested backups and a real recovery plan, so a failed disk never costs you a dataset.
Cloud Cost Optimization
Cut your cloud and compute spend without slowing the science — right-sizing, auto-scaling and storage tiering.
Pipeline Engineering & MLOps
Production-grade, reproducible pipelines (Nextflow / Snakemake, containers, CI/CD) and ML deployment that doesn't break.
Data & Software Engineering
Data Management
Secure storage, FAIR data practices, databases and LIMS integration designed for research.
LIMS & ELN Setup
Electronic lab notebooks and LIMS chosen, configured and wired to your instruments and pipelines.
Dashboards & Web Apps
Shiny / Streamlit / web dashboards that turn your data into something your whole team can explore.
Custom Scientific Software
Internal tools, apps and instrument integrations built around how your lab actually works.
AI Literature & Knowledge Tools
LLM / RAG assistants over your papers, protocols and data — ask your knowledge base in plain language.
Full Service Menu
Databases & data engineering, workflow automation, technical due diligence and more. View all services →
Training & Support
Training & Workshops
Hands-on sessions — fundamentals, Python/R, AI/ML, stats and reproducible research, taught with your own data. See all training →
Ongoing Support
Helpdesk, troubleshooting, pipeline maintenance and onboarding — an expert on call whenever you're stuck.
Flexible Engagement
One-off session, monthly retainer or embedded partner — choose how you work with us.
Your extended technical team, in four steps
Discovery call
We listen to your research goals and current bottlenecks — in plain language, no jargon.
Scoped plan
You get a clear proposal: deliverables, timeline and transparent pricing before any work begins.
We build & iterate
We do the technical heavy lifting, checking in regularly and adjusting as your questions evolve.
Handover & support
You receive reproducible results, documentation and ongoing support whenever you need it.
You focus on the science. We carry the technology.
Stay in your zone of genius. Every server, script and system headache becomes our job — not yours.
Do what only you can do.
- Design experiments & ask the big questions
- Generate and interpret your data
- Drive the biology and the discovery
- Publish, present & win grants
We take the technical load off your plate.
- Set up & maintain servers, cloud & storage
- Build, run & fix the analysis pipelines
- Train AI/ML models and write the code
- Handle backups, security & reproducibility
No more wrestling with software, clusters or error messages at midnight. That's our problem now.
From raw data to actionable answers
A look at the kind of work we deliver. More case studies coming soon.
Every tool earns its place.
Your data and unpublished work stay yours
Handing over sensitive research data is a big ask. Here's how we make it safe.
NDAs & DPAs as standard
We sign confidentiality and data-processing agreements before any data changes hands.
Your IP, 100% yours
You keep full ownership of all data, code, models and results we produce for you.
HIPAA / GDPR-aware
Access controls, encryption and audit trails appropriate to clinical and personal data.
Data residency on request
We keep your data in your chosen region — it never leaves the jurisdiction you pick.
Made for researchers, not engineers
If your science is generating more data than your team can analyse — and hiring a full-time bioinformatician or ML engineer isn't realistic — that's exactly where we fit.
- Academic and university research labs
- Core facilities and shared instrumentation centers
- Early-stage biotech and pharma startups
- Clinical and translational research groups
- Independent researchers and grant-funded projects
We speak both biology and code.
We exist to remove the technical barrier between researchers and their data. Our team blends bioinformatics, machine learning and software engineering — but we communicate in the language of your science.
Think of us as the IT and AI department your lab never had the budget to hire: on demand, deeply technical and genuinely invested in your discoveries.
Research-first
Every decision serves your scientific question, not a tech trend.
Transparent
Clear scope, clear pricing, clear results you can trust and cite.
Confidential
Your data and unpublished work are handled with strict security.
Lasting
We leave you with skills and tools, not a dependency.
Choose how you work with us
One-off Project
A single pipeline, model or fix for a specific problem. Fixed scope, fixed price, no commitment.
Monthly Retainer
A set block of analysis, support and training hours every month — your team's safety net.
Embedded Partner
We act as your dedicated, ongoing IT & AI team across all your projects.
Frequently asked questions
What does BioInformatics by LilySys do?
We're an on-demand bioinformatics, AI/ML and research-IT team. We build the genomics pipelines, custom machine-learning models, cloud/HPC infrastructure and data management that turn biological data into discovery — so researchers don't have to hire a full-time bioinformatician or ML engineer. We work per-project or on a monthly retainer.
How much does outsourced bioinformatics cost?
We price by outcome, not by the hour: fixed-scope projects with the deliverables and price agreed up front, or a monthly retainer for ongoing work. Either way it's a fraction of the cost of a full-time hire (which typically runs well over six figures a year, loaded), and you only pay for what you need.
Do I need a computer science background to work with you?
No. We communicate in the language of your science, not jargon. You design the experiments and ask the questions; we handle the code, servers and models and hand back reproducible, documented, publication-ready results.
What kinds of data and analysis can you handle?
Genomics, transcriptomics (RNA-seq), single-cell and spatial, proteomics, variant calling and metagenomics, plus custom AI/ML models, dashboards and data pipelines. We work across any organism and most common data types, from raw sequencing reads to a final interpretable report.
Who do you work with?
Academic and university research labs, core facilities and shared instrumentation centers, early-stage biotech and pharma startups, clinical and translational research groups, and independent grant-funded researchers — anyone generating more data than their team can analyse.
Is my data kept secure and confidential?
Yes. We sign NDAs and data-processing agreements before any data changes hands, you keep 100% of the IP, and we work in a HIPAA/GDPR-aware way with access controls and audit trails. We can also keep your data resident in your chosen region.
Where are you based and who do you serve?
We work remotely with research teams across India, the United States and Europe. Engagements are fully remote, with clear scope, transparent pricing and a free initial consultation.
Let's talk about your research.
Tell us what you're working on. The first consultation is free, and there's no obligation.