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Case Study · Bacterial WGS
From raw reads to actionable answers.
A reproducible three-stage pipeline that takes bacterial isolates from raw sequencing reads through quality control, de novo assembly and full in-silico characterisation — returning serovar, sequence type, antimicrobial-resistance genes, plasmids and mobile genetic elements, with publication-ready genome maps.
The Pipeline
Three stages. One clean output.
1
Quality Control
fastpFastQCMultiQC
2
De Novo Assembly
SPAdesQUAST
3
In Silico Profiling
SISTRSeqSero2MLSTBaktaAMRFinderPlusMOB-suiteIntegronFinderIslandPath-DIMOBPhiSpy
We build the same kind of reproducible pipeline around your data and question — RNA-seq, variant calling, single-cell, proteomics and beyond.
Have data that needs this kind of answer?
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